Hierarchy For All Packages

Package Hierarchies:

dk.brics.automaton, martin.common, martin.common.compthreads, martin.common.r, martin.common.xml, uk.ac.man.documentparser, uk.ac.man.documentparser.dataholders, uk.ac.man.documentparser.input, uk.ac.man.documentparser.input.util, uk.ac.man.documentparser.misc, uk.ac.man.entitytagger, uk.ac.man.entitytagger.doc, uk.ac.man.entitytagger.entities.misc, uk.ac.man.entitytagger.entities.species, uk.ac.man.entitytagger.evaluate, uk.ac.man.entitytagger.generate, uk.ac.man.entitytagger.matching, uk.ac.man.entitytagger.matching.matchers, uk.ac.man.entitytagger.networking

Class Hierarchy

• java.lang.Object
  • uk.ac.man.entitytagger.generate.AcronymAnalysis
  • uk.ac.man.entitytagger.networking.AlibabaServer
  • uk.ac.man.entitytagger.networking.AlibabaWorker (implements java.lang.Runnable)
  • martin.common.ArgParser
  • martin.common.ArrayIterator<E> (implements java.util.Iterator<E>)
  • uk.ac.man.documentparser.dataholders.Author
  • uk.ac.man.documentparser.input.BMC (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.input.BMCFactory (implements uk.ac.man.documentparser.input.InputFactory)
  • uk.ac.man.documentparser.input.BMCXML (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.input.BMCXMLFactory (implements uk.ac.man.documentparser.input.InputFactory)
  • martin.common.CacheMap<K,V> (implements java.lang.Iterable<T>)
  • uk.ac.man.entitytagger.entities.species.CatalogueOfLife
  • uk.ac.man.entitytagger.entities.misc.CellLines
  • martin.common.ChiTester
  • uk.ac.man.documentparser.input.util.CleanUnicode (implements uk.ac.man.documentparser.input.DocumentIterator)
  • martin.common.ComparableTuple<E,T> (implements java.lang.Comparable<T>)
  • uk.ac.man.entitytagger.matching.matchers.ConcurrentMatcher (implements java.util.Iterator<E>)
  • uk.ac.man.entitytagger.matching.matchers.ConcurrentMatcher.MatchProblem (implements martin.common.compthreads.Problem<E>)
  • uk.ac.man.entitytagger.generate.ConvertToVariantsProblemIterator (implements java.util.Iterator<E>)
  • uk.ac.man.entitytagger.generate.ConvertToVariantsProblemIterator.ConvertToVariantsProblem (implements martin.common.compthreads.Problem<E>)
  • dk.brics.automaton.CustomAutomatonMatcher (implements java.util.regex.MatchResult)
  • uk.ac.man.documentparser.input.DatabaseIterator (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.input.DatabaseListIterator (implements uk.ac.man.documentparser.input.DocumentIterator)
  • java.util.Dictionary<K,V>
    • java.util.Hashtable<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • java.util.Properties
        • martin.common.Properties
  • uk.ac.man.entitytagger.generate.DictionaryEntry
  • uk.ac.man.documentparser.input.Directory (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.dataholders.Document (implements java.io.Serializable)
  • uk.ac.man.documentparser.input.util.DocumentBuffer (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.DocumentParser
  • uk.ac.man.entitytagger.entities.misc.DrugBank
  • uk.ac.man.documentparser.input.Elsevier (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.input.ElsevierFactory (implements uk.ac.man.documentparser.input.InputFactory)
  • martin.common.Email
  • martin.common.xml.EntityResolver (implements org.xml.sax.EntityResolver)
  • uk.ac.man.entitytagger.EntityTagger
  • uk.ac.man.entitytagger.evaluate.Evaluate
  • uk.ac.man.entitytagger.evaluate.Evaluate.Tag
  • uk.ac.man.entitytagger.evaluate.EvaluateProblem (implements martin.common.compthreads.Problem<E>)
  • uk.ac.man.documentparser.dataholders.ExternalID
  • martin.common.ExtractAbbrev
  • uk.ac.man.entitytagger.entities.species.ExtractMesh
  • uk.ac.man.entitytagger.generate.GenerateAutomatons
  • uk.ac.man.entitytagger.generate.GenerateAutomatons.ProcessProblem (implements martin.common.compthreads.Problem<E>)
  • uk.ac.man.entitytagger.generate.GenerateAutomatons.ToAutomatonProblem (implements martin.common.compthreads.Problem<E>)
  • uk.ac.man.entitytagger.generate.GenerateAutomatons.ToAutomatonProblemIterator (implements java.util.Iterator<E>)
  • uk.ac.man.entitytagger.entities.species.GenerateDictionary
  • uk.ac.man.entitytagger.generate.GenerateMatchers
  • uk.ac.man.documentparser.input.IDIterator (implements uk.ac.man.documentparser.input.DocumentIterator)
  • martin.common.InputStreamDumper (implements java.lang.Runnable)
  • uk.ac.man.documentparser.dataholders.Journal
  • martin.common.Loggers
  • martin.common.compthreads.Master<E> (implements java.lang.Runnable)
    • martin.common.compthreads.ArrayBasedMaster<E> (implements java.lang.Runnable)
    • martin.common.compthreads.IteratorBasedMaster<E> (implements java.lang.Iterable<T>, java.util.Iterator<E>, java.lang.Runnable)
  • uk.ac.man.entitytagger.matching.Matcher
    • uk.ac.man.entitytagger.matching.matchers.ACIDMatcher
    • uk.ac.man.entitytagger.matching.matchers.AutomatonMatcher
    • uk.ac.man.entitytagger.matching.matchers.DuplicationMatcher
    • uk.ac.man.entitytagger.matching.matchers.IntersectionMatcher
    • uk.ac.man.entitytagger.matching.matchers.MatchPostProcessor
    • uk.ac.man.entitytagger.matching.matchers.PrecomputedMatcher
    • uk.ac.man.entitytagger.matching.matchers.RegexpMatcher
    • uk.ac.man.entitytagger.matching.matchers.SentenceMatcher
    • uk.ac.man.entitytagger.networking.SimpleClientMatcher
    • uk.ac.man.entitytagger.matching.matchers.TaxonGrabMatcher
    • uk.ac.man.entitytagger.matching.matchers.UnionMatcher
    • uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher (implements martin.common.Sizeable)
  • uk.ac.man.entitytagger.matching.MatchOperations
  • uk.ac.man.documentparser.input.Medline (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.input.MedlineFactory (implements uk.ac.man.documentparser.input.InputFactory)
  • uk.ac.man.documentparser.misc.MedlineFixer
  • uk.ac.man.documentparser.input.MedlineIndex (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.misc.MedlineIndexer
  • uk.ac.man.documentparser.input.MedlineIndexFactory (implements uk.ac.man.documentparser.input.InputFactory)
  • uk.ac.man.documentparser.input.MedlinePMCIndex (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.input.MedlinePMCIndexFactory (implements uk.ac.man.documentparser.input.InputFactory)
  • uk.ac.man.entitytagger.Mention (implements java.lang.Comparable<T>, java.io.Serializable)
  • uk.ac.man.entitytagger.Mention.IDPair
  • uk.ac.man.entitytagger.Mention.SimpleMention
  • uk.ac.man.documentparser.misc.MeshExtractor
  • martin.common.Misc
  • martin.common.xml.Misc
  • martin.common.MyConnection
  • martin.common.xml.MyNodeList (implements java.lang.Iterable<T>, org.w3c.dom.NodeList)
  • uk.ac.man.entitytagger.entities.misc.OBOParser
  • uk.ac.man.documentparser.input.OTMI (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.input.OTMIFactory (implements uk.ac.man.documentparser.input.InputFactory)
  • martin.common.Pair<E>
  • uk.ac.man.documentparser.input.PMC (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.input.PMC2 (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.input.PMCAbstract (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.input.PMCFactory (implements uk.ac.man.documentparser.input.InputFactory)
  • uk.ac.man.documentparser.input.PMCIndex (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.input.PMCIndexFactory (implements uk.ac.man.documentparser.input.InputFactory)
  • uk.ac.man.entitytagger.matching.Postprocessor
    • uk.ac.man.entitytagger.entities.misc.CellLinePostprocessor
  • uk.ac.man.documentparser.misc.RemoveDuplicates
  • uk.ac.man.entitytagger.evaluate.Result
  • martin.common.r.RGraphics
  • dk.brics.automaton.RunAutomaton (implements java.io.Serializable)
    • dk.brics.automaton.CustomRunAutomaton (implements java.io.Serializable)
  • uk.ac.man.documentparser.dataholders.Section (implements java.io.Serializable)
  • martin.common.Selector<E>
  • martin.common.SentenceSplitter (implements java.lang.Iterable<T>, java.util.Iterator<E>)
  • martin.common.SimpleClass<E> (implements martin.common.Sizeable)
  • uk.ac.man.entitytagger.networking.SimpleServer (implements java.util.Iterator<E>)
  • uk.ac.man.entitytagger.networking.SimpleServerWorker (implements martin.common.compthreads.Problem<E>)
  • uk.ac.man.documentparser.input.util.Skipper (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.input.util.Splitter (implements uk.ac.man.documentparser.input.DocumentIterator)
  • martin.common.SQL
  • martin.common.Stopwatch
  • martin.common.StreamIterator (implements java.lang.Iterable<T>, java.util.Iterator<E>)
  • uk.ac.man.entitytagger.doc.TaggedDocument
  • uk.ac.man.entitytagger.doc.TaggedSection
  • uk.ac.man.documentparser.input.TextFile (implements uk.ac.man.documentparser.input.DocumentIterator)
  • uk.ac.man.documentparser.input.TextFileFactory (implements uk.ac.man.documentparser.input.InputFactory)
  • martin.common.Tuple<E,T>
  • martin.common.compthreads.Worker<E> (implements java.lang.Runnable)
  • martin.common.xml.XPath

Interface Hierarchy

• martin.common.Function<E>
• uk.ac.man.documentparser.input.InputFactory
• java.lang.Iterable<T>
  • uk.ac.man.documentparser.input.DocumentIterator (also extends java.util.Iterator<E>)
• java.util.Iterator<E>
  • uk.ac.man.documentparser.input.DocumentIterator (also extends java.lang.Iterable<T>)
• martin.common.compthreads.Problem<E>
• martin.common.Sizeable

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • uk.ac.man.entitytagger.doc.TaggedDocument.Format
    • uk.ac.man.documentparser.dataholders.ExternalID.Source
    • uk.ac.man.documentparser.dataholders.Document.Type
    • uk.ac.man.documentparser.dataholders.Document.Text_raw_type
    • uk.ac.man.entitytagger.matching.Matcher.Disambiguation