uk.ac.man.entitytagger.entities.misc
Class OBOParser

java.lang.Object
  uk.ac.man.entitytagger.entities.misc.OBOParser

public class OBOParser
extends java.lang.Object

Constructor Summary

OBOParser()

Method Summary

private static void	clear(java.util.Map<java.lang.String,java.util.List<java.lang.String>> children, java.lang.String s, java.util.Set<java.lang.String> invalidParents)
private static void	filterNames(java.util.List<java.lang.String> names) Removes any entries in names that have a length shorter than four characters (that would cause a very large number of FNs)
static void	main(java.lang.String[] args)
private static void	populateRecursive(java.util.Set<java.lang.String> invalidParentsRecursive, java.util.Set<java.lang.String> invalidParents, java.io.File[] inFiles)
private static java.util.List<java.lang.String>	regexpify(java.util.List<java.lang.String> names, java.lang.String id)
private static java.lang.String	regexpify(java.lang.String str, java.lang.String id)
private static void	run(java.io.File[] inFiles, java.io.File outFile, java.io.File invalidParentsFile, java.io.File invalidParentsRecursiveFile, java.util.logging.Logger logger, java.sql.PreparedStatement pstmt, java.lang.String requiredNamespace)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OBOParser

public OBOParser()

Method Detail

main

public static void main(java.lang.String[] args)

Parameters:

args -

run

private static void run(java.io.File[] inFiles,
                        java.io.File outFile,
                        java.io.File invalidParentsFile,
                        java.io.File invalidParentsRecursiveFile,
                        java.util.logging.Logger logger,
                        java.sql.PreparedStatement pstmt,
                        java.lang.String requiredNamespace)

populateRecursive

private static void populateRecursive(java.util.Set<java.lang.String> invalidParentsRecursive,
                                      java.util.Set<java.lang.String> invalidParents,
                                      java.io.File[] inFiles)

clear

private static void clear(java.util.Map<java.lang.String,java.util.List<java.lang.String>> children,
                          java.lang.String s,
                          java.util.Set<java.lang.String> invalidParents)

regexpify

private static java.util.List<java.lang.String> regexpify(java.util.List<java.lang.String> names,
                                                          java.lang.String id)

filterNames

private static void filterNames(java.util.List<java.lang.String> names)

Removes any entries in names that have a length shorter than four characters (that would cause a very large number of FNs)

Parameters:

names -

regexpify

private static java.lang.String regexpify(java.lang.String str,
                                          java.lang.String id)