A B C D E F G H I J K L M N O P R S T U V W X Y

L

label - Variable in class martin.common.Stopwatch

lastReturned - Variable in class uk.ac.man.documentparser.input.PMCAbstract

line - Variable in class martin.common.StreamIterator

lines(List<Double>[], String[], File, String) - Method in class martin.common.r.RGraphics

lines(List<Double>[], String[], File) - Method in class martin.common.r.RGraphics

LINNAEUS_VERSION - Static variable in class uk.ac.man.entitytagger.EntityTagger

list - Variable in class martin.common.xml.MyNodeList

list - Variable in class uk.ac.man.documentparser.input.IDIterator

listKeys() - Method in class martin.common.CacheMap

load(URL) - Static method in class dk.brics.automaton.CustomRunAutomaton

Retrieves a serialized RunAutomaton located by a URL.

load(InputStream) - Static method in class dk.brics.automaton.CustomRunAutomaton

Retrieves a serialized RunAutomaton from a stream.

load(String) - Static method in class martin.common.Properties

load(String, Properties) - Static method in class martin.common.Properties

load(InputStream, Properties) - Static method in class martin.common.Properties

load(StringBuffer, String[]) - Method in class uk.ac.man.documentparser.input.PMC2

load(File, boolean) - Static method in class uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher

load(InputStream, boolean) - Static method in class uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher

loadAcromineFile(File) - Static method in class uk.ac.man.entitytagger.generate.AcronymAnalysis

loadAcronymProbabilities(File[]) - Method in class uk.ac.man.entitytagger.matching.Postprocessor

loadAcronymProbabilities(InputStream[]) - Method in class uk.ac.man.entitytagger.matching.Postprocessor

loadArray(File) - Static method in class uk.ac.man.entitytagger.generate.GenerateAutomatons

loadComments(File[], Logger) - Static method in class uk.ac.man.entitytagger.EntityTagger

loadCSV(File) - Static method in class martin.common.Misc

loadDict(File) - Method in class uk.ac.man.entitytagger.matching.matchers.TaxonGrabMatcher

loadDocLengthFilters(DocumentIterator) - Static method in class uk.ac.man.entitytagger.evaluate.Evaluate

loadDocumentIDSet(File) - Static method in class uk.ac.man.entitytagger.evaluate.Evaluate

loadEntityFrequencies(File[]) - Method in class uk.ac.man.entitytagger.matching.Postprocessor

loadEntityFrequencies(InputStream[]) - Method in class uk.ac.man.entitytagger.matching.Postprocessor

loadExtraSynonyms(File) - Method in class uk.ac.man.entitytagger.generate.GenerateMatchers

loadFile(File) - Static method in class martin.common.Misc

loadFile(File) - Method in class uk.ac.man.documentparser.input.PMC

loadFile(File) - Method in class uk.ac.man.documentparser.input.PMC2

loadFileSeparated(File, boolean) - Static method in class uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher

loadFromDB() - Method in class uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher

Loads a dictionary from a database

loadFromFile(File) - Static method in class uk.ac.man.entitytagger.Mention

loadFromFile(File, Set<String>, String, HashMap<String, String>) - Static method in class uk.ac.man.entitytagger.Mention

Will load a set of matches from a file, constrained such that only matches from documents in validDocumentIDs are returned.

loadFromFileToHash(File, Set<String>, String, HashMap<String, String>) - Static method in class uk.ac.man.entitytagger.Mention

Loads matches using loafFromFile(file,validDocumentIDs,conversionMap) and then splits them up to allow access by document ID.

loadIndexfile(File) - Static method in class uk.ac.man.entitytagger.evaluate.Evaluate

Loads an index file correlating two sets of document ids with eachother, so that they can be mapped to eachother (becoming equivalent during the evaluation)

loadMap(File) - Static method in class martin.common.Misc

loadMap(File, String, int, int) - Static method in class martin.common.Misc

loadMapSet(File, boolean) - Static method in class martin.common.Misc

loadMatcher(File) - Static method in class uk.ac.man.entitytagger.matching.matchers.AutomatonMatcher

Will load an automaton binary file, and return a created automaton matcher.

loadMatchers(File[]) - Static method in class uk.ac.man.entitytagger.matching.matchers.AutomatonMatcher

loadMeshToTaxFile(File) - Static method in class uk.ac.man.entitytagger.entities.species.ExtractMesh

loadPatterns(File) - Static method in class uk.ac.man.entitytagger.matching.matchers.ACIDMatcher

loadRArray(File, Logger) - Static method in class uk.ac.man.entitytagger.generate.GenerateAutomatons

loadRegexp(File, boolean, Logger) - Static method in class uk.ac.man.entitytagger.generate.GenerateMatchers

loadSeparated(File[], boolean) - Static method in class uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher

loadSeparatedFromDB(Connection, String[], boolean) - Static method in class uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher

loadSeparatedFromDBCached(Connection, String[], boolean, long, Logger) - Static method in class uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher

Creates a Map from tag identifiers to VariantDictionaryMatcher objects.

loadStopTerms(File[]) - Method in class uk.ac.man.entitytagger.matching.Postprocessor

loadStopTerms(InputStream[]) - Method in class uk.ac.man.entitytagger.matching.Postprocessor

loadStopwords(File, Logger) - Static method in class uk.ac.man.entitytagger.entities.misc.DrugBank

loadStream(InputStream, boolean) - Static method in class uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher

loadStringSetFromFile(File) - Static method in class martin.common.Misc

loadTable(File) - Static method in class martin.common.Misc

loadTrueDefinitions(String) - Method in class martin.common.ExtractAbbrev

loadValidEntities(File, String) - Static method in class uk.ac.man.entitytagger.evaluate.Evaluate

Loads a list of entity ids that should be processed during evaluation (anything else will be ignored)

logger - Variable in class martin.common.CacheMap

logger - Variable in class martin.common.MyConnection

logger - Variable in class uk.ac.man.documentparser.input.util.DocumentBuffer

logger - Variable in class uk.ac.man.entitytagger.networking.AlibabaWorker

Loggers - Class in martin.common

Loggers() - Constructor for class martin.common.Loggers

lowercase - Variable in class uk.ac.man.entitytagger.generate.GenerateAutomatons.ToAutomatonProblem

lowercase - Variable in class uk.ac.man.entitytagger.generate.GenerateAutomatons.ToAutomatonProblemIterator