A B C D E F G H I J K L M N O P R S T U V W X Y

F

factory - Variable in class martin.common.CacheMap

factory - Variable in class uk.ac.man.documentparser.input.Directory

falseNegatives - Variable in class martin.common.ExtractAbbrev

falsePositives - Variable in class martin.common.ExtractAbbrev

fetchNext() - Method in class uk.ac.man.documentparser.input.Directory

fetchNext() - Method in class uk.ac.man.documentparser.input.util.Skipper

fetchNextLine() - Method in class uk.ac.man.documentparser.input.MedlineIndex

fetchNextLine() - Method in class uk.ac.man.documentparser.input.MedlinePMCIndex

fetchNextLine() - Method in class uk.ac.man.documentparser.input.PMCIndex

fetchsize - Variable in class uk.ac.man.documentparser.input.util.DocumentBuffer

file - Variable in class uk.ac.man.documentparser.input.BMCXML

files - Variable in class uk.ac.man.documentparser.input.TextFile

filter(String) - Method in class uk.ac.man.documentparser.input.PMC2

filterByStopTerms(List<Mention>) - Method in class uk.ac.man.entitytagger.matching.Postprocessor

filterForCells(List<Mention>, String) - Method in class uk.ac.man.entitytagger.entities.misc.CellLinePostprocessor

filterNames(List<String>) - Static method in class uk.ac.man.entitytagger.entities.misc.OBOParser

Removes any entries in names that have a length shorter than four characters (that would cause a very large number of FNs)

filterTagsByDocLength(Map<String, List<Mention>>, Map<String, Integer>) - Static method in class uk.ac.man.entitytagger.evaluate.Evaluate

filterTagsByRegexp(Map<String, List<Mention>>, Map<String, Pattern>) - Static method in class uk.ac.man.entitytagger.evaluate.Evaluate

find() - Method in class dk.brics.automaton.CustomAutomatonMatcher

Find the next matching subsequence of the input.

findBestLongForm(String, String) - Method in class martin.common.ExtractAbbrev

findClosestMention(List<Mention>, int) - Static method in class uk.ac.man.entitytagger.Mention

findWithDelimitedID(char) - Method in class dk.brics.automaton.CustomAutomatonMatcher

Equivalent to find(), but for automatons with IDs that have been separated from the regular expression by delimiter

fix(MyConnection, MyConnection, File, File, Logger, int) - Static method in class uk.ac.man.documentparser.misc.MedlineFixer

fn - Variable in class uk.ac.man.entitytagger.evaluate.Result

followers - Variable in class martin.common.ArgParser

forenames - Variable in class uk.ac.man.documentparser.dataholders.Author

fp - Variable in class uk.ac.man.entitytagger.evaluate.Result

fpfn - Variable in class uk.ac.man.entitytagger.evaluate.Result

free() - Method in class martin.common.CacheMap

full - Variable in class uk.ac.man.documentparser.input.DatabaseIterator

full - Variable in class uk.ac.man.documentparser.input.DatabaseListIterator

Function<E> - Interface in martin.common

function(Object[]) - Method in interface martin.common.Function