A B C D E F G H I J K L M N O P R S T U V W X Y

E

e - Variable in class martin.common.SimpleClass

Elsevier - Class in uk.ac.man.documentparser.input

Elsevier(StringBuffer, String[]) - Constructor for class uk.ac.man.documentparser.input.Elsevier

Elsevier(File, String[]) - Constructor for class uk.ac.man.documentparser.input.Elsevier

ElsevierFactory - Class in uk.ac.man.documentparser.input

ElsevierFactory(String[]) - Constructor for class uk.ac.man.documentparser.input.ElsevierFactory

Email - Class in martin.common

Email() - Constructor for class martin.common.Email

email - Variable in class uk.ac.man.documentparser.dataholders.Author

enabledSwitches - Variable in class martin.common.ArgParser

end() - Method in class dk.brics.automaton.CustomAutomatonMatcher

Returns the offset after the last character matched.

end(int) - Method in class dk.brics.automaton.CustomAutomatonMatcher

Returns the offset after the last character matched of the specified capturing group.

end - Variable in class uk.ac.man.entitytagger.evaluate.Evaluate.Tag

end - Variable in class uk.ac.man.entitytagger.Mention

end - Variable in class uk.ac.man.entitytagger.Mention.SimpleMention

endXML - Variable in class uk.ac.man.documentparser.input.MedlineIndex

endXML - Variable in class uk.ac.man.documentparser.input.MedlinePMCIndex

entityFrequencies - Variable in class uk.ac.man.entitytagger.matching.Postprocessor

EntityResolver - Class in martin.common.xml

EntityResolver(String[]) - Constructor for class martin.common.xml.EntityResolver

EntityTagger - Class in uk.ac.man.entitytagger

Main species recognition class

EntityTagger() - Constructor for class uk.ac.man.entitytagger.EntityTagger

entry - Variable in class uk.ac.man.entitytagger.generate.GenerateAutomatons.ToAutomatonProblem

equalMatchers - Variable in class uk.ac.man.entitytagger.matching.matchers.UnionMatcher

equals(ComparableTuple<E, T>) - Method in class martin.common.ComparableTuple

equals(Evaluate.Tag) - Method in class uk.ac.man.entitytagger.evaluate.Evaluate.Tag

equals(Object) - Method in class uk.ac.man.entitytagger.Mention

escape(String) - Static method in class uk.ac.man.entitytagger.entities.misc.DrugBank

escapeIDs(HashMap<String, DictionaryEntry>) - Static method in class uk.ac.man.entitytagger.generate.GenerateMatchers

escapeRegexp(String) - Static method in class uk.ac.man.entitytagger.generate.GenerateMatchers

Evaluate - Class in uk.ac.man.entitytagger.evaluate

Evaluate() - Constructor for class uk.ac.man.entitytagger.evaluate.Evaluate

Evaluate.Tag - Class in uk.ac.man.entitytagger.evaluate

Simple dataholder class for a single mention

Evaluate.Tag(int, int) - Constructor for class uk.ac.man.entitytagger.evaluate.Evaluate.Tag

Evaluate.Tag(Mention) - Constructor for class uk.ac.man.entitytagger.evaluate.Evaluate.Tag

EvaluateProblem - Class in uk.ac.man.entitytagger.evaluate

Simple class for parallelising evaluations

EvaluateProblem(Map<String, List<Mention>>, Map<String, Map<String, List<Evaluate.Tag>>>, Map<String, List<Mention>>, Map<String, Map<String, List<Evaluate.Tag>>>, Map<String, String>, Set<String>, int, String[], String) - Constructor for class uk.ac.man.entitytagger.evaluate.EvaluateProblem

externalID - Variable in class uk.ac.man.documentparser.dataholders.Document

ExternalID - Class in uk.ac.man.documentparser.dataholders

ExternalID(String, ExternalID.Source) - Constructor for class uk.ac.man.documentparser.dataholders.ExternalID

ExternalID.Source - Enum in uk.ac.man.documentparser.dataholders

ExternalID.Source() - Constructor for enum uk.ac.man.documentparser.dataholders.ExternalID.Source

ExtractAbbrev - Class in martin.common

The ExtractAbbrev class implements a simple algorithm for extraction of abbreviations and their definitions from biomedical text.

ExtractAbbrev() - Constructor for class martin.common.ExtractAbbrev

extractAbbrPair(String, String) - Method in class martin.common.ExtractAbbrev

extractAbbrPairs(File) - Method in class martin.common.ExtractAbbrev

ExtractMesh - Class in uk.ac.man.entitytagger.entities.species

ExtractMesh() - Constructor for class uk.ac.man.entitytagger.entities.species.ExtractMesh