A B C D E F G H I J K L M N O P R S T U V W X Y

T

table - Variable in class uk.ac.man.documentparser.input.DatabaseListIterator

table - Variable in class uk.ac.man.entitytagger.matching.matchers.PrecomputedMatcher

tableNames - Variable in class uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher

tag(ArgParser) - Static method in class uk.ac.man.entitytagger.entities.species.ExtractMesh

tag - Variable in class uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher

the identifier for this particular matcher; dictionary terms will only be loaded from the database where this tag matches a tag column

TaggedDocument - Class in uk.ac.man.entitytagger.doc

Class representing a tagged document.

TaggedDocument(Document, TaggedSection[], TaggedSection[], List<Mention>, String) - Constructor for class uk.ac.man.entitytagger.doc.TaggedDocument

TaggedDocument.Format - Enum in uk.ac.man.entitytagger.doc

TaggedDocument.Format() - Constructor for enum uk.ac.man.entitytagger.doc.TaggedDocument.Format

TaggedSection - Class in uk.ac.man.entitytagger.doc

TaggedSection(Section, TaggedSection[], ArrayList<Mention>) - Constructor for class uk.ac.man.entitytagger.doc.TaggedSection

TaxonGrabMatcher - Class in uk.ac.man.entitytagger.matching.matchers

TaxonGrabMatcher(File) - Constructor for class uk.ac.man.entitytagger.matching.matchers.TaxonGrabMatcher

tempDir - Variable in class martin.common.r.RGraphics

terms - Variable in class uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher

array containing all terms in the dictionary

termToIdsMap - Variable in class uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher

array mapping terms to dictionary identifiers: termToIdsMap[i] contains all IDs for the term terms[i]

testMode - Variable in class martin.common.ExtractAbbrev

text - Variable in class uk.ac.man.documentparser.input.TextFile

text - Variable in class uk.ac.man.entitytagger.Mention.SimpleMention

text - Variable in class uk.ac.man.entitytagger.Mention

TextFile - Class in uk.ac.man.documentparser.input

TextFile(File[]) - Constructor for class uk.ac.man.documentparser.input.TextFile

TextFile(String) - Constructor for class uk.ac.man.documentparser.input.TextFile

TextFileFactory - Class in uk.ac.man.documentparser.input

TextFileFactory() - Constructor for class uk.ac.man.documentparser.input.TextFileFactory

threadsem - Variable in class martin.common.compthreads.ArrayBasedMaster

threadsem - Variable in class martin.common.compthreads.IteratorBasedMaster

title - Variable in class uk.ac.man.documentparser.dataholders.Document

title - Variable in class uk.ac.man.documentparser.dataholders.Journal

title - Variable in class uk.ac.man.documentparser.dataholders.Section

title - Variable in class uk.ac.man.entitytagger.evaluate.EvaluateProblem

toAutomatons(ArrayList<DictionaryEntry>, int, Integer, boolean, Logger) - Method in class uk.ac.man.entitytagger.generate.GenerateAutomatons

converts a list of dictionary entries to their corresponding automatons

toHTML() - Method in class uk.ac.man.documentparser.dataholders.Document

toHTML(int) - Method in class uk.ac.man.documentparser.dataholders.Section

toHTML(boolean, Function<Pair<String>>) - Method in class uk.ac.man.entitytagger.doc.TaggedDocument

toHTML(String, List<Mention>, TaggedDocument.Format, boolean, Function<Pair<String>>) - Static method in class uk.ac.man.entitytagger.doc.TaggedDocument

Converts a document text, with given NER mentions, to e.g.

toHTML() - Method in class uk.ac.man.entitytagger.doc.TaggedSection

tokenizationPattern - Variable in class uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher

toList(String) - Static method in class martin.common.SentenceSplitter

toRegexp(String) - Static method in class uk.ac.man.entitytagger.entities.misc.CellLines

toregexp(Set<String>) - Static method in class uk.ac.man.entitytagger.entities.misc.DrugBank

toString() - Method in class martin.common.ComparableTuple

toString() - Method in class martin.common.Pair

toString() - Method in class martin.common.SimpleClass

toString() - Method in class martin.common.Tuple

toString() - Method in class uk.ac.man.documentparser.dataholders.Author

toString() - Method in class uk.ac.man.documentparser.dataholders.Document

toString(boolean) - Method in class uk.ac.man.documentparser.dataholders.Document

toString(Section[]) - Static method in class uk.ac.man.documentparser.dataholders.Section

toString() - Method in class uk.ac.man.documentparser.dataholders.Section

toString() - Method in class uk.ac.man.entitytagger.evaluate.Evaluate.Tag

toString() - Method in class uk.ac.man.entitytagger.evaluate.Result

toString() - Method in class uk.ac.man.entitytagger.generate.DictionaryEntry

toString() - Method in class uk.ac.man.entitytagger.Mention

totalSem - Static variable in class martin.common.Stopwatch

tp - Variable in class uk.ac.man.entitytagger.evaluate.Result

trueNegatives - Variable in class martin.common.ExtractAbbrev

truePositives - Variable in class martin.common.ExtractAbbrev

Tuple<E,T> - Class in martin.common

Tuple(E, T) - Constructor for class martin.common.Tuple

type - Variable in class uk.ac.man.documentparser.dataholders.Document