A B C D E F G H I J K L M N O P R S T U V W X Y

I

id - Variable in class martin.common.compthreads.Worker

ID - Variable in class uk.ac.man.documentparser.dataholders.Document

ID - Variable in class uk.ac.man.documentparser.dataholders.ExternalID

id - Variable in class uk.ac.man.documentparser.input.PMC2

id - Variable in class uk.ac.man.documentparser.input.TextFile

id - Variable in class uk.ac.man.entitytagger.generate.DictionaryEntry

id - Variable in class uk.ac.man.entitytagger.Mention.IDPair

id - Static variable in class uk.ac.man.entitytagger.networking.AlibabaWorker

id_exts - Variable in class uk.ac.man.documentparser.input.DatabaseListIterator

id_exts_counter - Variable in class uk.ac.man.documentparser.input.DatabaseListIterator

idend - Variable in class uk.ac.man.documentparser.input.BMCXML

IDIterator - Class in uk.ac.man.documentparser.input

IDIterator(File) - Constructor for class uk.ac.man.documentparser.input.IDIterator

idLines - Variable in class uk.ac.man.entitytagger.Mention

ids - Variable in class uk.ac.man.entitytagger.evaluate.EvaluateProblem

ids - Variable in class uk.ac.man.entitytagger.Mention

ids - Variable in class uk.ac.man.entitytagger.Mention.SimpleMention

idstart - Variable in class uk.ac.man.documentparser.input.BMCXML

ignoreCase - Variable in class uk.ac.man.entitytagger.matching.matchers.AutomatonMatcher

ignoreCase - Variable in class uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher

ignoreCoordinates - Variable in class uk.ac.man.documentparser.dataholders.Document

ignoreHashedLines - Variable in class martin.common.StreamIterator

implode(Object[], String) - Static method in class martin.common.Misc

index(Connection, String, List<String>) - Static method in class martin.common.SQL

indexStream - Variable in class uk.ac.man.documentparser.input.MedlineIndex

indexStream - Variable in class uk.ac.man.documentparser.input.MedlinePMCIndex

indexStream - Variable in class uk.ac.man.documentparser.input.PMCIndex

init() - Method in class uk.ac.man.entitytagger.matching.matchers.VariantDictionaryMatcher

Will load the dictionary terms and identifiers from the database, sort the terms and set up the proper mappings

initDBTable(Connection, String, Logger, boolean) - Static method in class uk.ac.man.entitytagger.matching.MatchOperations

initVariantTable(Connection, String, boolean) - Static method in class uk.ac.man.entitytagger.generate.GenerateMatchers

Will create a database table and prepare it for insertion of dictionary entries

InputFactory - Interface in uk.ac.man.documentparser.input

InputStreamDumper - Class in martin.common

InputStreamDumper(InputStream) - Constructor for class martin.common.InputStreamDumper

InputStreamDumper(InputStream, OutputStream) - Constructor for class martin.common.InputStreamDumper

InputStreamDumper(InputStream, File) - Constructor for class martin.common.InputStreamDumper

InputStreamDumper(InputStream, StringBuffer) - Constructor for class martin.common.InputStreamDumper

IntersectionMatcher - Class in uk.ac.man.entitytagger.matching.matchers

IntersectionMatcher(List<Matcher>) - Constructor for class uk.ac.man.entitytagger.matching.matchers.IntersectionMatcher

isAcceptDelimited(int, char) - Method in class dk.brics.automaton.CustomRunAutomaton

isAmbigous() - Method in class uk.ac.man.entitytagger.Mention

isIgnoreCoordinates() - Method in class uk.ac.man.documentparser.dataholders.Document

ISSN - Variable in class uk.ac.man.documentparser.dataholders.Journal

issue - Variable in class uk.ac.man.documentparser.dataholders.Document

isTrueDefinition(String, String) - Method in class martin.common.ExtractAbbrev

isValid(int, int) - Method in class uk.ac.man.documentparser.dataholders.Document

isValidMatch(String, Mention) - Static method in class uk.ac.man.entitytagger.matching.Matcher

isValidShortForm(String) - Method in class martin.common.ExtractAbbrev

item(int) - Method in class martin.common.xml.MyNodeList

iterator() - Method in class martin.common.CacheMap

iterator() - Method in class martin.common.compthreads.IteratorBasedMaster

iterator() - Method in class martin.common.SentenceSplitter

iterator() - Method in class martin.common.StreamIterator

iterator() - Method in class martin.common.xml.MyNodeList

iterator() - Method in class uk.ac.man.documentparser.input.BMC

iterator() - Method in class uk.ac.man.documentparser.input.BMCXML

iterator() - Method in class uk.ac.man.documentparser.input.DatabaseIterator

iterator() - Method in class uk.ac.man.documentparser.input.DatabaseListIterator

iterator() - Method in class uk.ac.man.documentparser.input.Directory

iterator() - Method in class uk.ac.man.documentparser.input.Elsevier

iterator() - Method in class uk.ac.man.documentparser.input.IDIterator

iterator() - Method in class uk.ac.man.documentparser.input.Medline

iterator() - Method in class uk.ac.man.documentparser.input.MedlineIndex

iterator() - Method in class uk.ac.man.documentparser.input.MedlinePMCIndex

iterator() - Method in class uk.ac.man.documentparser.input.OTMI

iterator() - Method in class uk.ac.man.documentparser.input.PMC

iterator() - Method in class uk.ac.man.documentparser.input.PMC2

iterator() - Method in class uk.ac.man.documentparser.input.PMCAbstract

iterator() - Method in class uk.ac.man.documentparser.input.PMCIndex

iterator() - Method in class uk.ac.man.documentparser.input.TextFile

iterator() - Method in class uk.ac.man.documentparser.input.util.CleanUnicode

iterator() - Method in class uk.ac.man.documentparser.input.util.DocumentBuffer

iterator() - Method in class uk.ac.man.documentparser.input.util.Skipper

iterator() - Method in class uk.ac.man.documentparser.input.util.Splitter

iterator - Variable in class uk.ac.man.entitytagger.generate.ConvertToVariantsProblemIterator

IteratorBasedMaster<E> - Class in martin.common.compthreads

Class for facilitating parallelized computations.

IteratorBasedMaster(Iterator<Problem<E>>, int, Integer) - Constructor for class martin.common.compthreads.IteratorBasedMaster

Creates a new IteratorBasedMaster.

IteratorBasedMaster(Iterator<Problem<E>>, int) - Constructor for class martin.common.compthreads.IteratorBasedMaster

Creates a new IteratorBasedMaster.

IteratorBasedMaster(Problem<E>[], int) - Constructor for class martin.common.compthreads.IteratorBasedMaster

IteratorBasedMaster(Collection<Problem<E>>, int) - Constructor for class martin.common.compthreads.IteratorBasedMaster